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Name: Mathematica

Version: 5.2

Description:

Mathematica is an interactive, programmable environment for symbolic and numerical computation with integrated graphics and typesetting capabilities.

Availability: x86 only

Installation Path:

/usr/local/mathematica
/usr/local/bin/[math,MathKernel,mathematica,Mathematica,mcc]

Documentation:

Usage Notes:

Mathematica is installed on SciClone for evaluation purposes courtesy of Wolfram Research, Inc. It is currently available only on mistral.sciclone.wm.edu, with a temporary two-user license which is valid through February 26, 2007. If you find Mathematica to be useful for your work and would like to extend the license and/or increase the number of concurrent licenses, please contact sciclone@compsci.wm.edu.

To use Mathematica on SciClone, you must login to mistral.sciclone.wm.edu from an authorized host, i.e., one of the systems that you listed on your SciClone account request. If you need to modify this list, contact sciclone@compsci.wm.edu.

To run Mathematica in text mode, simply type "math" at a shell prompt.

To run Mathematica with the interactive GUI (notebook interface), first ensure that the following conditions have been met and then invoke "mathematica" at a shell prompt:

  • The system you login from must be running an X11 server.
  • Your local SSH configuration must support X11 forwarding.
  • You must tell your X11 server where to find the Mathematica fonts. On Unix, Linux, and Mac OS X systems, this is done via the following commands:
  • xset fp+ tcp/tempest.sciclone.wm.edu:7100
    xset fp rehash

  • Your network connection to SciClone must be fast enough to support a remote X11 session.

Additional information about establishing X11 connections to remote workstations can be found in the SciClone User's Guide.

Note: The interactive Help Browser can be sluggish via a remote X11 connection. You may find that the web-based documentation provides a more satisfactory browsing experience.

To run Mathematica non-interactively as a PBS batch job, use the math kernel mode (text-based interface) and read your command script from standard input, e.g.:

qsub -l nodes=1:mistral
#!/bin/csh
cd mydir
math <script.m >results.out
^D

The "-noprompt" option may also be useful in batch runs to reduce the verbosity of the output, e.g.,

qsub -l nodes=1:mistral
#!/bin/csh
cd mydir
math -noprompt <script.m >results.out
^D